Breakfast Egg Muffins Recipe (Egg Cups) (2024)

By Laura

Posted May 01, 2021, Updated Feb 29, 2024

5 from 16 votes

6 Comments

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This egg muffins recipe is a delicious, healthy, low-carb, make-ahead breakfast that’s freezer-friendly. Egg cups are easy to make with only 8 ingredients (including eggs, veggies, cheese, and spices) and are customizable!

Breakfast Egg Muffins Recipe (Egg Cups) (2)

These egg muffs are a delicious healthy breakfast recipe that’s perfect for meal prep (just like these breakfast egg sandwiches)! This simple, straightforward egg muffin recipe is made with with bacon, eggs, vegetables and cheese.

No extras (like milk, bread, potatoes, etc.). Just a bunch of protein and nutrients to start the day right!

Because eggs are so healthy and versatile they can be enjoyed for breakfast lunch and dinner! We often make egg muffins, egg casserole, this amazing omelette recipe, and this homemade frittata for healthy meals.

Breakfast Egg Muffins Recipe (Egg Cups) (3)

Egg Muffins: Ingredients & Substitutions

These egg muffins are highly customizable to your specific tastes! Here are some notes about the ingredients.

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  • Bacon. Turkey bacon can be used in place of regular bacon. However, because of the lower fat content, you will need to add 1 Tablespoon olive oil to the fry pan when you add the veggies to cook them well. You can also use crumbled breakfast sausage in place of bacon with equally delicious results! If you wish to leave out the bacon and make this vegetarian, use 2 TBS olive oil to sauté the vegetables.
  • Minced Garlic.Garlic powder can be used in place of minced garlic, just add it with the rest of the spices.
  • Onion.I usually use a sweet, white onion. Any variety works well: red onion, yellow onion, green onions, etc.
  • Vegetables.Choose your favorite veggies! Bell peppers, broccoli, shredded zucchini, carrots, etc.
  • Dijon mustard.Any mustard variety works well in these egg muffins!
  • Eggs.there is no substituions for eggs in these breakfast egg cups.
  • Cheddar Cheese.I recommend an extra sharp cheddar cheese for the best flavor! Other cheeses that taste great in this egg muffin recipe are: Colby jack, Swiss cheese, pepper jack (for a spicy flavor) and mozzarella!
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How to Make Egg Muffins

This egg muffin recipe is really easy to make, as always we’ll walk through the process step by step, and don’t forget to watch the video!

Cook the bacon, onion and garlic

The first step in making these egg muffin cups is to sauté the bacon, onion and garlic over medium heat until the bacon just begins to brown. Be sure to stir every few minutes.

Note:For a vegetarian version (without bacon), simply add 2 TBS olive oil to the pan and sauté the onions and garlic together until the onions are soft, then add the rest of the veggies!

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Add veggies, cover and cook

Once the bacon just begins to brown, add vegetables, cover and cook for 5-10 minutes or until the veggies are soft and bacon is browned, stirring occasionally.

Note:If you use a variety of vegetables that cook at different speeds, make sure to handle that accordingly. For example, carrots cook faster than zucchini, so I would add the carrots and cook them until they become soft, then add zucchini.

Cool

Remove the pan from the heat and let the veggie/bacon mixture cool while you finish making the egg muffins recipe.

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Combine Eggs & Spices

While the bacon/veggie mixture is cooling, whisk the eggs. Then add mustard, salt, pepper and paprika to the beaten eggs and whisk to combine.

Next, add the cooled bacon/veggie mixture to the beaten eggs and stir until the mixture is uniform throughout. Then add the cheese!

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Bake

Fill each well of the prepared muffin tin ¾ full with egg mixture. Be careful not overfill the wells, because these egg muffins rise and will overflow if they are filled too much!

Bake in preheated oven for 25-30 minutes, or until tops are set and slightly browned and spring back when lightly pressed.

Cool

Let the egg cups cool for 5 minutes, then release them from the pan using a spoon or sharp knife, and serve warm.

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Serve

Serve these egg muffins with your favorite breakfast recipes, I especially love serving them with crispy potatoes and fruit salad. Or, if serving for dinner a nice side salad goes very well with egg muffins!

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Egg Cups Recipe FAQs

How do you store egg muffins?

Store these egg muffins in an airtight container in the refrigerator for up to 5 days,

How do you freeze egg muffins?

To freeze, simply place the egg muffins in a freezer-friendly, airtight container and freeze for up to 2 months. To thaw, transfer the egg muffins to the refrigerator and let thaw overnight. Or reheat in the microwave for 60 seconds per muffin.

How do you keep egg muffins from collapsing in the middle?

Follow this egg muffin recipe and you won’t have any sinking middles! Make sure you don’t over-whisk the ingredients, which creates air bubbles that could cause sinking.

Will egg muffins stick to paper liners?

In my experience, yes. That’s why I recommend greasing your muffin in well. They bake up nice and hearty so they are easy to remove if the pan is properly greased.

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If you make and love our recipes, it would mean so much to me if you would leave a comment and rating! And don’t forget to follow along with us on Instagram, Pinterest, Facebook, and Youtube – be sure to tag @joyfoodsunshine and use the hashtag #joyfoodsunshine so we can your creations!

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Breakfast Egg Muffins Recipe (Egg Cups) (13)

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Breakfast Egg Muffins Recipe (Egg Cups)

Laura

This egg muffins recipe is a delicious, healthy, low-carb, make-ahead breakfast that's freezer-friendly. Egg cups are easy to make with only 8 ingredients (including eggs, veggies, cheese, and spices) and are customizable!

5 from 16 votes

Course Breakfast, brunch, lunch, Main Course

Cuisine American

Servings 14 Muffins

Calories 119

Prep Time15 minutes minutes

Cook Time30 minutes minutes

Total Time45 minutes minutes

Ingredients

Instructions

  • Preheat oven to 350 degrees F. Grease a standard 12-cup muffin tin, set aside.

  • In a large skillet, over medium heat, cook diced bacon until it just starts becomes soft.

  • Add minced garlic and onion and cook until bacon begins to brown.

  • Add vegetables, cover and cook for 5-10 minutes or until the veggies are soft and bacon is browned, stirring occasionally.

  • Remove from heat and let cool.

  • In a medium bowl, whisk together eggs.

  • Add mustard, sea salt, pepper and paprika and whisk to combine.

  • Add cooled bacon/veggie mixture to the beaten eggs and stir to combine.

  • Add cheese. Stir to combine.

  • Fill each well of the prepared muffin tin ¾ full with egg mixture. Do not overfill! These egg muffins rise and will overflow if the wells are filled too much!

  • Bake in preheated oven for 25-30 minutes, or until tops are set and slightly browned.

  • Cool for 5 minutes and serve warm.

Video

Notes

Ingredient Substitutions

  • Bacon. Turkey bacon can be used in place of regular bacon. However, because of the lower fat content, add 1 Tablespoon olive oil to the fry pan when you add the veggies to cook them well. You can also use crumbled breakfast sausage in place of bacon with equally delicious results! If you wish to leave out the bacon and make this vegetarian, use 2 Tablespoons olive oil to sauté the vegetables.
  • Minced Garlic.Garlic powder can be used in place of minced garlic, just add it with the rest of the spices.
  • Onion.I usually use a sweet, white onion. Any variety works well: red onion, yellow onion, green onions, etc.
  • Vegetables.Choose your favorite veggies! Bell peppers, broccoli, shredded zucchini, carrots, etc.
  • Dijon mustard.Any mustard variety works well in these egg muffins!
  • Eggs.there is no substituions for eggs in these breakfast egg cups.
  • Cheddar Cheese.I recommend an extra sharp cheddar cheese for the best flavor! Other cheeses that taste great in this egg muffin recipe are: Colby jack, Swiss cheese, pepper jack (for a spicy flavor) and mozzarella!

Store/Freeze

Store these egg muffins in an airtight container in the refrigerator for up to 5 days, or in the freezer for up to 2 months.

To freeze, simply place the egg muffins in a freezer-friendly, airtight container and freeze for up to 2 months. To thaw, transfer the egg muffins to the refrigerator and let thaw overnight. Or reheat in the microwave for 60 seconds per muffin.

Nutrition

Serving: 1muffin | Calories: 119kcal | Carbohydrates: 2g | Protein: 8g | Fat: 9g | Saturated Fat: 4g | Trans Fat: 1g | Cholesterol: 153mg | Sodium: 233mg | Potassium: 102mg | Fiber: 1g | Sugar: 1g | Vitamin A: 325IU | Vitamin C: 5mg | Calcium: 84mg | Iron: 1mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Did you enjoy this recipe? Have a question? Leave a comment below!

BReakfast Recipes

Egg Casserole (Egg Bake)

Frittata Recipe

Crispy Oven Roasted Potatoes

Breakfast Egg Sandwiches

Omelette Recipe

Best Quiche Recipe

Breakfast Egg Muffins Recipe (Egg Cups) (2024)

FAQs

How do you keep egg cups from sticking to muffin tins? ›

Preheat the oven to 350ºF and grease a non-stick muffin pan (affiliate link). Alternatively, you can use paper liners or silicone liners to prevent sticking. You'll also need a rimmed baking sheet that the muffin pan fits into. (This is important!

How do you keep egg muffins from deflating? ›

To keep your egg muffins from deflating, add a bit of flour and baking soda to your mixture.

Why are my egg muffins watery? ›

If your egg muffins are soggy, you likely used a lot of veggies with high water content. Next time, saute the veggies before adding them to the egg cups to remove the excess moisture.

How long do egg muffins last in the fridge? ›

Storage tips

Keep them in the refrigerator for up to 3 days. Grab a large container to store them all together OR portion them out into smaller containers for individual serving sizes to take with you for a quick breakfast on the go. Freeze: Individually wrap cooled egg muffins in plastic wrap.

Should muffin cups be greased? ›

Muffins are great, but it's frustrating when they get stuck in the pan. The trick to preventing muffins from sticking to the muffin tins is to grease each muffin cup thoroughly.

How do you get baked egg off muffin tins? ›

To remove any baked-on residue on the top of the pan, grab a sturdy pan scraper. Combined with hot, soapy water, it will quickly remove even burnt-on bits. Rinse the pan thoroughly, then dry.

What ingredient prevents muffins from falling apart? ›

Pudding will help the muffin keep its structure and give the texture a chewy crumb with a nice little bounce that won't crumble apart.

How do you keep muffins moist and fluffy? ›

The Best Way to Store Muffins
  1. STEP ONE: Let the muffins cool completely on a wire rack.
  2. STEP TWO: Line an airtight storage container with paper towels.
  3. STEP THREE: Place muffins in the container, on top of the paper towels.
  4. STEP FOUR: Place an additional paper towel layer on top of the muffins.

Can I use parchment paper for egg bites? ›

Egg Bite Instructions

If using oven: Preheat oven to 350 degrees. Line a baking sheet with parchment paper. Remove egg bites from packaging.

Can I use muffin liners for egg cups? ›

What you Need for Egg Muffins. muffin tin – I highly recommend a 12-cup silicone muffin pan for this recipe. Or, get silicone muffin liners. They're inexpensive and will make dishes a lot easier!

What does adding more eggs do to muffins? ›

Eggs are responsible for giving baked goods structure, which means the amount you use directly affects the resulting texture. Using too few eggs will make your desserts dense, but using too many will make them rubbery.

Why are my muffins dense and not fluffy? ›

Too much liquid – If there is too much liquid in the batter, the muffins will be very dense.

What are egg cups used for? ›

Egg cups are the little dishes that soft-boiled eggs are served in. They keep the egg upright to maintain its form. When you cut the top of the egg off while it's positioned in an egg cup, you end up with the perfect yolky dipping bowl for toast.

Can you reheat egg cups? ›

Microwave: Warm up individual egg muffins in the microwave for about 30-40 seconds. Oven: Reheat baked egg cups in the oven or toaster oven at 350°F for about 8-10 minutes, or until warm. Air Fryer:You can also reheat them in the Air Fryer or oven at 375°F for 3- 5 minutes or until warm.

Can muffins with eggs be left out? ›

Bottom Line. While most baked goods can be left out at room temperature, there are some exceptions. Always store cakes with fresh fruit, whipped cream or cream cheese frosting in the refrigerator along with breads featuring meat or hard-boiled eggs.

Why do my muffins stick to the muffin cups? ›

The amount of fat in the muffin batter affects how easily the baked muffin can be removed from the pan. Lightly spray the bottom of each muffin cup with no-stick cooking spray or use paper or aluminum foil cup liners. Use aluminum foil cup liners. Spray the foil cup liners with no-stick cooking spray.

Will eggs stick to cupcake liners? ›

My egg muffins comes out clean every time. Most muffin trays are made with non-stick materials now anyway, so a tiny bit of oil is enough to keep it from sticking at all. Spray the liner with a cooking spray or just bake them in the muffin pan sprayed with a vegetable release.

How do you keep egg casserole from sticking? ›

How to Keep Those Eggs from Sticking
  1. Use butter or coconut oil! Before I researched this, I was always coating my pans with cooking spray. ...
  2. Use the right kind of pan. Non-stick pans are not always non-stick and there are some safety concerns about non-stick coating. ...
  3. Get the temperature right.

Why did my muffins stick to the paper cups? ›

Muffins often stick to the bottom of the wrapper because we're more likely to try to eat them warm, while cupcakes are cooled entirely so we can frost them. Cakes and muffins shrink a bit as they cool, so they'll actually loosen their grip on the wrapper slightly as they come to room temperature.

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